LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-4782-3p


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Gene
miRNA
Score
DIANA Links
RP11-47L3.1
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-49
0.210
0
RP11-47L3.1
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591886
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
205-213
0.185
0
XLOC_002866
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006263
Biotype: transcript isomorph
Gene id: XLOC_002866
Gene Name: XLOC_002866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
208-225
0.132
0
7mer
159-173
0.029
0
XLOC_009651
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-405
0.153
1
AC008103.4
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1149-1161
0.143
1
CTBP1-AS2
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-588
0.116
1
7mer
1484-1503
0.025
1
XLOC_000017
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000801
Biotype: transcript isomorph
Gene id: XLOC_000017
Gene Name: XLOC_000017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
458-462
0.007
0
6mer
34-38
0.007
0
6mer
419-423
0.007
0
6mer
380-384
0.007
0
6mer
101-105
0.006
0
6mer
447-451
0.006
0
6mer
311-334
0.006
0
6mer
120-143
0.006
0
6mer
303-307
0.006
0
6mer
150-154
0.006
0
6mer
62-66
0.006
0
6mer
369-373
0.006
0
6mer
408-412
0.006
0
6mer
178-182
0.006
0
6mer
265-269
0.005
0
6mer
227-231
0.005
0
6mer
197-220
0.005
0
6mer
189-193
0.005
0
6mer
73-77
0.005
Not Conserved
6mer
4-27
0.005
Not Conserved
6mer
112-116
0.005
0
6mer
273-296
0.005
0
6mer
235-258
0.005
0
6mer
341-345
0.005
Not Conserved
RP11-780O24.2
hsa-miR-4782-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531918
Biotype: antisense
Gene id: ENSG00000255523
Gene Name: RP11-780O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
87-92
0.062
0
7mer
266-289
0.048
0
8mer+wobble
444-459
0.026
0
chr22-38_28785274-29006793.1
hsa-miR-4782-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151346-151370
0.009
1
8mer
254366-254382
0.009
6
7mer
82343-82364
0.007
Not Conserved
7mer
91730-91735
0.005
2
7mer
4205-4210
0.004
0
7mer
223203-223215
0.004
1
7mer
19649-19673
0.004
1
7mer
89554-89567
0.004
1
7mer
250842-250863
0.004
0
7mer
70533-70558
0.003
1
6mer
150051-150071
0.003
9
7mer
160604-160621
0.003
Not Conserved
7mer
64743-64760
0.003
0
7mer
18011-18031
0.003
1
7mer
48049-48075
0.003
2
7mer
108183-108203
0.003
0
6mer
176316-176320
0.003
2
7mer
63529-63549
0.002
Not Conserved
8mer+wobble
108307-108324
0.002
Not Conserved
6mer
177742-177746
0.002
3
6mer
195520-195532
0.002
0
6mer
207423-207444
0.002
7
6mer
173684-173706
0.002
1
6mer
57845-57868
0.002
1
6mer
42005-42009
0.002
2
6mer
231566-231588
0.002
0
6mer
195092-195107
0.002
4
6mer
23475-23501
0.002
1
6mer
89158-89172
0.002
2
6mer
40394-40404
0.002
1
6mer
56468-56484
0.002
1
6mer
54993-55009
0.001
0
6mer
117716-117733
0.001
1
6mer
150420-150436
0.001
1
6mer
185914-185933
0.001
0
6mer
129483-129495
0.001
1
7mer
110444-110460
0.001
0
6mer
76070-76079
0.001
0
6mer
60472-60488
0.001
Not Conserved
6mer
129859-129878
0.001
1
8mer+mismatch
171570-171590
0.001
0
6mer
55901-55922
0.001
1
6mer
15673-15694
0.001
Not Conserved
6mer
204004-204024
0.001
1
6mer
18863-18882
0.001
Not Conserved
6mer
250707-250727
0.001
Not Conserved
6mer
252897-252919
0.001
1
6mer
27718-27737
0.001
Not Conserved
6mer
248803-248816
0.001
0
6mer
253409-253433
0.001
Not Conserved
6mer
24887-24907
0.001
0
6mer
102432-102454
0.001
1
6mer
30193-30216
0.001
1
6mer
111410-111437
0.001
0
6mer
60563-60583
0.001
0
6mer
253787-253807
0.001
0
6mer
223240-223254
0.001
1
6mer
110994-111014
0.001
0
6mer
129877-129898
0.001
0
6mer
111026-111045
0.001
0
6mer
129513-129536
0.001
1
LOC283070
hsa-miR-4782-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_027322.1
Biotype: sense
Gene id: NR_027322.1 (gene)
Gene Name: LOC283070
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2309-2326
0.117
11
7mer
606-624
0.008
1
6mer
2004-2026
0.003
Not Conserved
LINC01189
hsa-miR-4782-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
213-231
0.105
0
6mer
3153-3172
0.019
1
6mer
1929-1949
0.003
0
RP11-111F5.8
hsa-miR-4782-3p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428709
Biotype: lincRNA
Gene id: ENSG00000233651
Gene Name: RP11-111F5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3095-3113
0.105
0
6mer
150-169
0.018
1
6mer
1373-1393
0.003
0
COLCA1
hsa-miR-4782-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532918
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4942-4966
0.105
10
7mer
939-944
0.006
0
6mer
1115-1139
0.003
0
CTD-2561F5.1
hsa-miR-4782-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555328
Biotype: lincRNA
Gene id: ENSG00000258497
Gene Name: CTD-2561F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2368-2388
0.089
1
8mer
86-94
0.022
1
XLOC_010704
hsa-miR-4782-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022093
Biotype: transcript isomorph
Gene id: XLOC_010704
Gene Name: XLOC_010704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
552-572
0.111
1
COLCA1
hsa-miR-4782-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000620864
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7544-7568
0.096
10
6mer
328-354
0.004
0
7mer
3541-3546
0.004
0
6mer
3717-3741
0.002
0
COLCA1
hsa-miR-4782-3p
0.997
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000355430
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4885-4909
0.096
10
7mer
882-887
0.007
0
6mer
1058-1082
0.003
0
RP13-16H11.7
hsa-miR-4782-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454991
Biotype: lincRNA
Gene id: ENSG00000234296
Gene Name: RP13-16H11.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
416-428
0.102
0
COLCA1
hsa-miR-4782-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540738
Biotype: antisense
Gene id: ENSG00000196167
Gene Name: COLCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4942-4966
0.092
10
7mer
939-944
0.006
0
6mer
1115-1139
0.003
0
KCNQ1OT1
hsa-miR-4782-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-4782-3p
Sequence: ugauugucuucauaucuagaac
MirBase ID: MIMAT0019945
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14359-14366
0.011
1
9mer
30859-30885
0.009
Not Conserved
8mer
27320-27342
0.007
0
8mer
25796-25803
0.007
0
8mer
53502-53525
0.007
0
7mer
21846-21864
0.006
0
7mer
24616-24639
0.004
1
7mer
81976-81993
0.004
0
7mer
27159-27164
0.003
0
7mer
33276-33285
0.003
0
6mer
54032-54054
0.002
5
6mer
18674-18698
0.002
1
6mer
10621-10638
0.002
1
6mer
64258-64275
0.002
1
6mer
64050-64064
0.002
2
6mer
48380-48398
0.002
1
7mer
31230-31245
0.002
0
6mer
48642-48661
0.002
1
6mer
7358-7379
0.002
1
6mer
15178-15193
0.002
0
6mer
1660-1683
0.002
1
6mer
40888-40901
0.002
0
6mer
51560-51568
0.002
1
6mer
23539-23543
0.002
1
6mer
29200-29221
0.002
0
6mer
68133-68137
0.002
1
6mer
6537-6556
0.001
Not Conserved
6mer
15936-15951
0.001
0
6mer
22112-22123
0.001
1
6mer
85840-85860
0.001
1
6mer
25770-25784
0.001
0
6mer
7308-7333
0.001
0
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